Journal: British Journal of Cancer

Article Title: COX2 genetic variation, NSAIDs, and advanced prostate cancer risk

doi: 10.1038/sj.bjc.6603874

Figure Lengend Snippet: Associations between COX2 variants and prostate cancer risk

Article Snippet: Because genotyping assays for two SNPs (rs4648307, rs4648261) could not be designed and one SNP (rs5272) was monomorphic in our study population, we subsequently used the Perlegen and Seattle SNP data to maintain a comprehensive evaluation of the COX2 locus.

Techniques:

Journal: BMC Research Notes

Article Title: Hereditary hearing loss SNP-microarray pilot study

doi: 10.1186/s13104-018-3466-7

Figure Lengend Snippet: Overview of data files/data sets

Article Snippet: Data set 1 , Infinium HumanOmni1-Quad v1.0 SNP-microarray data , This dataset contains the raw intensity data files (Grn.idat and Red.idat) of each patient, as well as Matrix Signal Intensities (.txt) and Matrix Processed data (.txt) , NCBI Gene Expression Omnibus Data series accession: GSE111131 Data identifiers: GSM3022603 , GSM3022604 , GSM3022605 , GSM3022606 , GSM3022607 , GSM3022608 , GSM3022609 , GSM3022610 , GSM3022611 , GSM3022612 , GSM3022613 , GSM3022614 , GSM3022615 , GSM3022616 , GSM3022617 , GSM3022618 , GSM3022619 , GSM3022620 , GSM3022621 , GSM3022622 , GSM3022623 , GSM3022624 , GSM3022625 , GSM3022626 , GSM3022627 , GSM3022628 , GSM3022629 , GSM3022630 , GSM3022631 , GSM3022632 , GSM3022633 , GSM3022634 , GSM3022635 , GSM3022636 , GSM3022637 , GSM3022638 , GSM3022639 , GSM3022640 , GSM3022641 , GSM3022642 , GSM3022643 , GSM3022644 , GSM3022645 , GSM3022646 , GSM3022647 , GSM3022648 , GSM3022649 , GSM3022650 , GSM3022651 , GSM3022652 , GSM3022653 , GSM3022654 , GSM3022655 , GSM3022656 , GSM3022657 , GSM3022658 , GSM3022659 , GSM3022660 , GSM3022661 , GSM3022662 , GSM3022663 , GSM3022664 , GSM3022665 , GSM3022666 , GSM3022667 , GSM3022668 , GSM3022669 , GSM3022670 , GSM3022671 , GSM3022672 , GSM3022673 , GSM3022674 , GSM3022675 , GSM3022676 , GSM3022677 , GSM3022678 , GSM3022680 , GSM3022681 , GSM3022682 , GSM3022683 , GSM3022684 , GSM3022685 , GSM3022686 , GSM3022687 , GSM3022688 , GSM3022689 , GSM3022690 , GSM3022691 , GSM3022692 , GSM3022693 , GSM3022694 , GSM3022695 , GSM3022696 , GSM3022697 , GSM3022698 , GSM3022699 , GSM3022700 , GSM3022701 , GSM3022702 , GSM3022703 , GSM3022704 , GSM3022705 , GSM3022706 , GSM3022707 , GSM3022708 , GSM3022709 , GSM3022710 , GSM3022711 GSE111131 _Martix_signal_intensities.txt.gz GSE111131 _Matrix_Processed.txt.gz.

Techniques: Gene Expression

Journal:

Article Title: Cis -acting expression quantitative trait loci in mice

doi: 10.1101/gr.3216905

Figure Lengend Snippet: Informative SNP frequency across chromosome 16 between B6 and DBA. The horizontal line in graphs A and B represents the threshold of five SNP/25 kb. Regions with five or less SNPs in a 25-kb interval were designated IBD between B6 and DBA. (A) The entire chromosome 16; (B) a closer look at an ∼15-Mb region on proximal chromosome 16, where the small vertical red lines at the base of the figure represent genes with cis eQTL in this region. (C) further zooms in on NM_053181, depicting the boundaries for the various regions considered in the SNP overlapping probe analysis.

Article Snippet: Testing whether additive QTL effects for cis eQTL are evenly distributed about zero Given the slight bias noted above in probes overlapping SNPs for genes with cis eQTL, and given that we do not have a reliable estimate on the false-negative rate for SNPs identified as polymorphic between B6 and DBA in the Celera SNP data, we further investigated the extent to which probes overlapping SNPs may be responsible for cis -acting eQTL by examining whether the additive effects related to the cis -acting eQTL were upwardly biased in the direction of the B6 allele.

Techniques: